The 'pathobiome' -- a new understanding of disease -- ScienceDaily
The concept acknowledges that all organisms are in fact complex communities of viruses, microbes and other small organisms (e.g. parasites) which can interact to affect health or disease status at any given time.
These complex communities continually interact with their hosts, sometimes conferring benefits (e.g. "good" bacteria in the human gut microbiome), and at other times causing harm by contributing to disease.
When these communities combine to cause disease they are termed "pathobiomes" -- a recognition of their collective shift away from the healthy-state "symbiome."